דילוג לניווט ראשי דילוג לחיפוש דילוג לתוכן הראשי

Locally consistent parsing for text indexing in small space

פרסום מחקרי: פרק בספר / בדוח / בכנספרסום בספר כנסביקורת עמיתים

30 ציטוטים ‏(Scopus)

תקציר

We consider two closely related problems of text indexing in a sub-linear working space. The first problem is the Sparse Suffix Tree (SST) construction, where a text S is given in read-only memory, along with a set of suffixes B, and the goal is to construct the compressed trie of all these suffixes ordered lexicographically, using only O(|B|) words of space. The second problem is the Longest Common Extension (LCE) problem, where again a text S of length n is given in read-only memory with some parameter 1 ≤ τ ≤ n, and the goal is to construct a data structure that uses O(nτ ) words of space and can compute for any pair of suffixes their longest common prefix length. We show how to use ideas based on the Locally Consistent Parsing technique, that were introduced by Sahinalp and Vishkin [44], in some nontrivial ways in order to improve the known results for the above problems. We introduce new Las-Vegas and deterministic algorithms for both problems. For the randomized algorithms, we introduce the first Las-Vegas SST construction algorithm that takes O(n) time. This is an improvement over the last result of Gawrychowski and Kociumaka [22] who obtained O(n) time for Monte Carlo algorithm, and O(nplog |B|) time with hight probability for Las-Vegas algorithm. In addition, we introduce a randomized Las-Vegas construction for a data structure that uses O(nτ ) words of space, can be constructed in linear time with high probability and answers LCE queries in O(τ) time. For the deterministic algorithms, we introduce an SST construction algorithm that takes O(nlog |Bn|) time (for |B| = Ω(log n)). This is the first almost linear time, O(n · polylog n), deterministic SST construction algorithm, where all previous algorithms take at least Ω (min{n|B|, |nB2|}) time. For the LCE problem, we introduce a data structure that uses O(nτ ) words of space and answers LCE queries in O(τplog n) time, with O(nlog τ) construction time (for τ = O(lognn)). This data structure improves both query time and construction time upon the results of Tanimura et al. [47].

שפה מקוריתאנגלית
כותר פרסום המארח31st Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2020
עורכיםShuchi Chawla
עמודים607-626
מספר עמודים20
מסת"ב (אלקטרוני)9781611975994
סטטוס פרסוםפורסם - 2020
פורסם באופן חיצוניכן
אירוע31st Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2020 - Salt Lake City, ארצות הברית
משך הזמן: 5 ינו׳ 20208 ינו׳ 2020

סדרות פרסומים

שםProceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms
כרך2020-January

כנס

כנס31st Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2020
מדינה/אזורארצות הברית
עירSalt Lake City
תקופה5/01/208/01/20

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