TY - JOUR
T1 - A non-parametric approach to particle picking in all frames
AU - Neiterman, Evgeny Hershkovitch
AU - Heimowitz, Ayelet
AU - Ben-Artzi, Gil
N1 - Publisher Copyright:
© 2025
PY - 2025/6
Y1 - 2025/6
N2 - Single-particle cryo-electron microscopy (cryo-EM) has significantly advanced macromolecular structure reconstruction. However, a key limitation is the conventional reliance on micrographs obtained by motion correction and averaging, which inherently loses the richness of information contained within each frame of the original movie. The future of cryo-EM reconstruction ideally involves harnessing the raw signal from every frame to unlock potentially higher quality structures. In this paper, we present a first essential step toward this paradigm shift, that is, a novel, non-parametric method for detecting tomographic projections across all movie frames, using temporal consistency. Our method is inspired by Structure-from-Motion (SfM), and independent of motion correction, CTF estimation, and initial reconstruction. Our experimental results demonstrate reduced outlier rate and accurate particle localization comparable to existing approaches throughout the entire movie sequence.
AB - Single-particle cryo-electron microscopy (cryo-EM) has significantly advanced macromolecular structure reconstruction. However, a key limitation is the conventional reliance on micrographs obtained by motion correction and averaging, which inherently loses the richness of information contained within each frame of the original movie. The future of cryo-EM reconstruction ideally involves harnessing the raw signal from every frame to unlock potentially higher quality structures. In this paper, we present a first essential step toward this paradigm shift, that is, a novel, non-parametric method for detecting tomographic projections across all movie frames, using temporal consistency. Our method is inspired by Structure-from-Motion (SfM), and independent of motion correction, CTF estimation, and initial reconstruction. Our experimental results demonstrate reduced outlier rate and accurate particle localization comparable to existing approaches throughout the entire movie sequence.
KW - Cryo-electron microscopy
KW - Micrographs
KW - Particle picking
KW - Single-particle reconstruction
UR - http://www.scopus.com/inward/record.url?scp=105005197318&partnerID=8YFLogxK
U2 - 10.1016/j.jsb.2025.108201
DO - 10.1016/j.jsb.2025.108201
M3 - ???researchoutput.researchoutputtypes.contributiontojournal.article???
C2 - 40334801
AN - SCOPUS:105005197318
SN - 1047-8477
VL - 217
JO - Journal of Structural Biology
JF - Journal of Structural Biology
IS - 2
M1 - 108201
ER -